PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g04140.1
Common NameLR48_Vigan06g004600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 175aa    MW: 18958.6 Da    PI: 7.8371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g04140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.5e-141260255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r  ++  +Wv+eIr+p+    +  r++lg+f  +e+Aa+a++ a+++l+g
  Vang07g04140.1 12 LYRGIR--SRGRKWVSEIREPR----KaSRIWLGTFPKPEMAAAAYDVAALALKG 60
                    69***7..44568*******94....36***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-71160IPR001471AP2/ERF domain
CDDcd000182.61E-121170No hitNo description
SMARTSM003802.4E-241274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-241269IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-161270IPR016177DNA-binding domain
PROSITE profilePS5103217.8731268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAPSLSSKKH PLYRGIRSRG RKWVSEIREP RKASRIWLGT FPKPEMAAAA YDVAALALKG  60
DGAVLNLPHS VSKYQIPATN SAADIRTAAS AAAAMMKAEI EASHNIASQT ETTHIDATTW  120
RFENDFLDEE AIFGMPSLLV DMAGGMLLSP PRMSPPPSDN SPEKQAAETL WSYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520566.13e-95PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ904e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0L9UPB01e-126A0A0L9UPB0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5P01e-126A0A0S3T5P0_PHAAN; Uncharacterized protein
STRINGGLYMA01G42510.11e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-28ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]